The Administration Department manages the daily operations and cross-department coordination at CIBR. As an information hub, it is in charge of conference and events organization, construction of administrative and information systems, use of official seals, message delivery, file management, services for staff members, and emergency processing.

The Scientific Research Department is in charge of external scientific research collaborations and internal research services for CIBR. Committed to establishing “small core, big network” operating principles at CIBR, the Office focuses on providing matching services among the four tiers of collaborative networks, including the cooperating institutes at home and abroad, the shared research institutes in Beijing, the Scientific Advisory Committee, and CIBR laboratories, in order to facilitate scientific research cooperation, academic exchange, research planning, project management, China Brain Project related services, intellectual property management, and technology transfer, etc.

The Educational Administration Department takes responsibility for recruiting, nurturing, and training graduate students and postdoctoral researchers at CIBR, specifically, promoting the joint student programs with the six universities, managing the student training sessions, and assisting the scientific exploration of post-doctoral scholars.

The Human Resources Department of the Administrative Centre is in charge of talents affaires, personnel services, and trade union works. Among these directives, which, the talents affaires are the most essential for institutional grown and ongoing function. The work direction of HR Department is consistent with that of the Center . According to “Human-Oriented” principles, the team strives to make talents at all levels could be "attracted, stable, and full used of".

The Maintenance Department is in charge of infrastructure construction and maintenance for CIBR. Specifically, it operates and maintains the Phase I basic facilities, including the electrical grid, air purification and filtration systems, ventilation system, and air conditioning system, among others, as well as managing the Phase I upgrades and Phase II construction according to long-term plans.

The Equipment Support Department is in charge of purchasing research materials, fixed assets management, use of laboratory animals, and other activities related to laboratory safety, including training in professional research techniques, biosafety management, and laboratory upgrades, etc.

The Finance Department manages the finances, taxes, and accounting for CIBR. Guided by national and institutional financial rules and regulations, the Office has established and refined its financial accounting and internal supervision systems, making budgets and financial reports for CIBR and each department to improve the financial efficiency and ensure the sustainable development of the institute.

Network Information Office is mainly responsible for managing, and implementing information technology-related projects; coordinating the construction,management,and maintenance of public infrastructure and systems for information technology; constructing information security systems, carrying out information security protection and education work; designing, constructing, and maintaining laboratory and platform cluster websites; conducting scientific research mapping, designing internal logos and desktop support, and other related work.